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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8165896_8166639_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8165896 - 8166639
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCCCCATTAACT
Flanking Amino Acid:
FATDPNSEWKEHAEADTFFC
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
59
0.36
1.7
70.32
46.2

Associated Gene:

Gene:
TBC1D13
Ensembl Gene ID:
ENSAPLG00000004702
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043067
8159476 - 8168412
8937
ENSAPLT00000037309
8163729 - 8168412
4684
ENSAPLT00000004860
8163729 - 8168412
4684