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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8176123_8176380_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8176123 - 8176380
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGCATTG
5'SS Class:
major
3'SS Sequence:
TTCCATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AGGTTTCTAACT
Flanking Amino Acid:
DQDLEAIRKQDLVELYLTNC
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.2
59.4
42.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.7
0.71
0.8
73
37
Minor 5ss
40.3
-1.1
3.4
55.2
49
Minor BPS
56.1
0.27
1.7
71.26
39.8

Associated Gene:

Gene:
ZER1
Ensembl Gene ID:
ENSAPLG00000012789
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013330
8175032 - 8188785
13754