About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8176822_8181535_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8176822 - 8181535
Intron Length:
4714

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCA|GCAGATCTC
5'SS Class:
weak_major
3'SS Sequence:
GATATCACTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
TACAGCTGAAAT
Flanking Amino Acid:
VIAQLHKLRSLRSSTVKMNR
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.4
60.8
40.6
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
63.3
0.3
1
52.8
42.2
Minor 5ss
28.6
-2.5
4.3
48.6
41.9
Minor BPS
46.8
-0.1
2
64.4
45.1

Associated Gene:

Gene:
ZER1
Ensembl Gene ID:
ENSAPLG00000012789
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013330
8175032 - 8188785
13754