About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8183773_8184454_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8183773 - 8184454

Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTTGGTATG

5'SS Class:
major

3'SS Sequence:
CTTCTGCCCACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTCAT

U12 Branch Point Sequence:
GATTCTTGAACT

Flanking Amino Acid:
EAVGKMGFVMTMLKLIQKKL

Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67.4
0.41
1.2
66.5
44.4

Major BPS
94.9
1.12
0.6
93.9
14.7

Major PPT
75.1
0.56
0.8
68.5
32

Minor 5ss
34.5
-1.8
2.9
40.3
39.8

Minor BPS
71.9
0.77
1.4
83.25
37.1

Associated Gene:

Gene:
ZER1

Ensembl Gene ID:

Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8175032 - 8188785
13754