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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8186085_8187045_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8186085 - 8187045
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
AGTTCTACAATA
Flanking Amino Acid:
DINSRRNINYRSFEPILRLL
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
81.7
0.71
0.9
77.3
36.6
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
49.7
-0
1.8
63.93
36.2

Associated Gene:

Gene:
ZER1
Ensembl Gene ID:
ENSAPLG00000012789
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013330
8175032 - 8188785
13754