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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8187144_8187542_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8187144 - 8187542
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CCTATTTTATTC
Flanking Amino Acid:
WALYNLVSVYPDKYCPLLIK
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.1
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
43.3
-0.7
2.7
58.7
38.8
Minor BPS
48.1
-0.1
1.6
53.38
39.6

Associated Gene:

Gene:
ZER1
Ensembl Gene ID:
ENSAPLG00000012789
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013330
8175032 - 8188785
13754