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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8198242_8199117_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8198242 - 8199117
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAGCAT
U12 Branch Point Sequence:
TTTTCCTTGTTT
Flanking Amino Acid:
MRRCGYCMVKQPMRAKHCQV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
50.9
0.02
1.5
63.4
42.8
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
54.5
0.22
3.5
90.9
33.1

Associated Gene:

Gene:
ZDHHC12
Ensembl Gene ID:
ENSAPLG00000012997
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013533
8196472 - 8200191
3720