Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8204634_8205191_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8204634 - 8205191

Intron Length:

558

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGGCT

5'SS Class:

major

3'SS Sequence:

ATCTTTCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TAATTTTGAACT

Flanking Amino Acid:

SSEALSIIRKLLRKCPERRL

Intron Amino Acid Position:

774

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

72.4

37.1

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

83.2

0.75

0.8

77.8

30.3

Minor 5ss

31.9

-2.1

3.6

48.1

47.5

Minor BPS

66.2

0.59

1.4

78.68

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013093

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013673

8203531 - 8218620

15090