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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8205710_8206239_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8205710 - 8206239
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTACAGAAGT
Flanking Amino Acid:
KIADFGLCKEGIGFGDRTNT
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
83
0.74
0.8
76.6
32.2
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
49.2
0.02
2.2
79.28
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013093
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013673
8203531 - 8218620
15090