About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8206962_8207050_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8206962 - 8207050
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCCTGACA
Flanking Amino Acid:
HEDVFPEHMARFYTACVVLG
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.4
36.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.5
0.73
0.7
81.2
30.1
Minor 5ss
34.6
-1.8
2.8
40.9
45.3
Minor BPS
63.3
0.41
1.7
74.62
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013093
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013673
8203531 - 8218620
15090