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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8208353_8210474_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8208353 - 8210474
Intron Length:
2122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCTCCT
5'SS Class:
major
3'SS Sequence:
CGTTTCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
GTCTCAGCAATT
Flanking Amino Acid:
VTREISCTSGRKKAVQLEDF
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
62.5
43.7
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
78.8
0.65
0.8
73.8
31.3
Minor 5ss
35.9
-1.6
3.2
51.3
45.1
Minor BPS
44.5
-0.3
2.3
66.06
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013093
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013673
8203531 - 8218620
15090