Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8211806_8212771_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8211806 - 8212771

Intron Length:

966

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

ATGACTCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TTGACTATGACT

Flanking Amino Acid:

RQKRIFPKQKGKEFLRAPQM

Intron Amino Acid Position:

422

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

73.2

39.3

Major BPS

84.4

0.85

1.1

34.5

Major PPT

69.8

0.45

59.4

42.2

Minor 5ss

44.2

-0.6

2.9

59.3

45.5

Minor BPS

57.4

0.31

1.7

76.77

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013093

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013673

8203531 - 8218620

15090