Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_821209_821636_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

821209 - 821636

Intron Length:

428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TCTTGGTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

CCACCCTTACCT

Flanking Amino Acid:

AAEAIQAVRDNKLHAFIWDS

Intron Amino Acid Position:

685

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

40.1

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

81.6

0.71

0.9

72.6

42.4

Minor 5ss

28.4

-2.5

3.1

31.4

36.6

Minor BPS

58.6

0.35

1.7

46.5

Associated Gene:

Gene:

GRIN1

Ensembl Gene ID:

ENSAPLG00000012612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013240

817441 - 836204

18764

ENSAPLT00000027978

813159 - 836204

23046