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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8216298_8217695_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8216298 - 8217695
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
TTTCTCTGCACA
Flanking Amino Acid:
IQMYSSATSKERKLLATAQQ
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
81.9
0.72
0.9
80.1
31.9
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
54.7
0.14
1.9
73.43
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013093
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013673
8203531 - 8218620
15090