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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8229437_8230955_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8229437 - 8230955
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATC
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGCTTCTCAACT
Flanking Amino Acid:
STEIKWKSGKDLTKRSSQTQ
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.4
31.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87.3
0.84
0.7
84.9
29.1
Minor 5ss
39.2
-1.2
3
54
43.2
Minor BPS
63.5
0.5
1.6
75.14
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013781
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014389
8228854 - 8234935
6082