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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8231070_8231243_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8231070 - 8231243
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTCAAATCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTGCTTTCAAAT
Flanking Amino Acid:
DIKSGYRIDFYFDENPYFEN
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
71.5
33.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.7
0.53
0.9
66.5
39.3
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
51.7
0.13
1.6
70.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013781
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014389
8228854 - 8234935
6082