Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_823292_823581_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

823292 - 823581

Intron Length:

290

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTTACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCAGAT

U12 Branch Point Sequence:

TCTTGTTTACCA

Flanking Amino Acid:

AVMLYLLDRFSPFGRFKVNS

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.7

81.3

32.8

Major BPS

65.3

0.38

60.7

37.6

Major PPT

79.9

0.67

0.9

73.7

40.6

Minor 5ss

30.9

-2.2

3.2

39.6

46.4

Minor BPS

55.2

0.16

70.26

42.8

Associated Gene:

Gene:

GRIN1

Ensembl Gene ID:

ENSAPLG00000012612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027978

813159 - 836204

23046

ENSAPLT00000013240

817441 - 836204

18764