About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_82445_82808_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82445 - 82808
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCTGCA
5'SS Class:
major
3'SS Sequence:
CTTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAAAC
U12 Branch Point Sequence:
CTTGTTTCCACA
Flanking Amino Acid:
MTVALSVPEIGDLPPLILSP
Intron Amino Acid Position:
1416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.1
39.9
Major BPS
48.9
-0
0.9
54.6
27.1
Major PPT
81.1
0.7
0.8
75.9
32.8
Minor 5ss
37.4
-1.4
3.3
50.7
45.6
Minor BPS
45
-0.4
2
58
42.5

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002789
72667 - 112105
39439