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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8254852_8255314_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8254852 - 8255314
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ACGTTTGGAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
ACTTCACGAACT
Flanking Amino Acid:
DDTHTDPVYQVSWLPDAKHR
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
68.7
0.46
1
71.3
34
Major PPT
58.9
0.2
1.1
54.1
44.3
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
49.4
0.03
2.1
73.77
42.3

Associated Gene:

Gene:
WDR34
Ensembl Gene ID:
ENSAPLG00000014296
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014909
8250203 - 8257893
7691