Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_825805_825897_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

825805 - 825897

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTACGTACA

5'SS Class:

major

3'SS Sequence:

GGGCTGATCACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

TCGGGCTGATCA

Flanking Amino Acid:

VQVGIYNGSHVLTNDRKIIW

Intron Amino Acid Position:

335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.3

71.8

39.9

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

58.7

0.2

49.8

42.8

Minor 5ss

36.3

-1.5

2.9

42.3

37.7

Minor BPS

42.4

-0.5

2.1

51.39

46.4

Associated Gene:

Gene:

GRIN1

Ensembl Gene ID:

ENSAPLG00000012612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027978

813159 - 836204

23046

ENSAPLT00000013240

817441 - 836204

18764