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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8260678_8261218_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8260678 - 8261218
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CACTCCTTGATT
Flanking Amino Acid:
TLESQLEATKRKHQEIRAMR
Intron Amino Acid Position:
2211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.1
0.72
0.7
76.3
25.7
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
70.5
0.73
1.2
75.52
41.8

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568