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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8265881_8266137_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8265881 - 8266137
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
CTTAACTGACCA
Flanking Amino Acid:
LLEAQEHFRKVEDLFLTFAK
Intron Amino Acid Position:
2053

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
78.8
0.65
1
78.2
34
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
47.2
-0.2
2
62.1
43.6

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568