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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8269500_8269710_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8269500 - 8269710
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
CCCATGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATATTATTCACA
Flanking Amino Acid:
LLEADISAHEDRLKDLNSQA
Intron Amino Acid Position:
1676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.6
0.44
0.9
60.6
40.2
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
50.6
0.01
2
67.52
38.5

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568