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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8270820_8272955_R

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8270820 - 8272955
Intron Length:
2136

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTTAGAAA
5'SS Class:
major
3'SS Sequence:
GTCATGCTCAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CAGTTTCTAATA
Flanking Amino Acid:
KDPTNIQVNISKHQKHQAFE
Intron Amino Acid Position:
1551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.3
52.9
39.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
48.5
-0
1.7
52.8
41.5
Minor 5ss
23.1
-3.1
3.7
30.7
42.9
Minor BPS
49.1
-0
1.6
56
37.8

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568