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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8274363_8274502_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8274363 - 8274502
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTGTTAACA
Flanking Amino Acid:
GAEALLERHQEHRTEIDARA
Intron Amino Acid Position:
1344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.4
0.41
1
61.7
40
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
67.3
0.54
2
80.05
35.9

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568