Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_827734_828185_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

827734 - 828185

Intron Length:

452

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGCACC

5'SS Class:

major

3'SS Sequence:

CTACTCATGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAT

U12 Branch Point Sequence:

TGCTCCTCTACT

Flanking Amino Acid:

SGNALRYAPDGVIGLQLING

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.1

62.4

42.4

Major BPS

87.1

0.92

0.7

85.9

22.5

Major PPT

66.6

0.37

62.3

38.2

Minor 5ss

39.4

-1.2

3.1

49.4

41.2

Minor BPS

59.4

0.38

1.9

77.54

44.4

Associated Gene:

Gene:

GRIN1

Ensembl Gene ID:

ENSAPLG00000012612

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027978

813159 - 836204

23046

ENSAPLT00000013240

817441 - 836204

18764