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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8279287_8282913_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8279287 - 8282913
Intron Length:
3627

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCTTGGCCT
5'SS Class:
weak_major
3'SS Sequence:
CTCCTTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
TTCTCCTTGTTC
Flanking Amino Acid:
NKIQHPSSICWYHSLLELGE
Intron Amino Acid Position:
1054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.23
1.3
56.2
42.6
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
80
0.67
0.9
71.8
38.1
Minor 5ss
25.7
-2.8
4
37.8
40.9
Minor BPS
47.7
-0.2
3.5
73.15
38.8

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568