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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8283730_8284118_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8283730 - 8284118
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTTTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TCTCTATTCATC
Flanking Amino Acid:
ALREQAQSCRQQVAPTDDET
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
69
0.43
1
69
37
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
46.9
-0.2
2
60.09
39.5

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568