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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8286068_8286271_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8286068 - 8286271
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTCCA
5'SS Class:
major
3'SS Sequence:
TTATATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTGAATTAACT
Flanking Amino Acid:
KEPIAASTNRGKDLIGVQNL
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.2
63.7
42.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87
0.83
0.8
85
35
Minor 5ss
29.5
-2.4
2.8
34.1
41.3
Minor BPS
58
0.33
1.9
78.09
43.9

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568