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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8287522_8287652_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8287522 - 8287652
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTCCTCATCA
Flanking Amino Acid:
KKLLEATELKGIKLREANQQ
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.8
0.65
0.8
77.5
30.1
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
69.5
0.61
1.8
83.94
36.4

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568