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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8289130_8289510_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8289130 - 8289510
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
GTTTCCTTACTT
Flanking Amino Acid:
QVDNWMSKQEAFLLNEDLGD
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
73.9
29.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
79.5
0.66
0.7
78.3
28.9
Minor 5ss
29.2
-2.4
3.1
32.8
35.7
Minor BPS
75.3
0.87
1.5
88.65
36.5

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568