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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8289957_8290506_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8289957 - 8290506
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATGG
5'SS Class:
major
3'SS Sequence:
TCGCATTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
AACTTATTCACT
Flanking Amino Acid:
ALLDRHQEHKGEIDAHEDSF
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
58.4
41.4
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
69.7
0.44
0.9
64.3
36.4
Minor 5ss
42.8
-0.8
3
56.2
48
Minor BPS
48.9
-0
2
68.18
42.5

Associated Gene:

Gene:
SPTAN1
Ensembl Gene ID:
ENSAPLG00000014718
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015697
8258262 - 8297829
39568