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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8313849_8314204_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8313849 - 8314204
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGAAA
5'SS Class:
major
3'SS Sequence:
GATATATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CATTCCTGATAT
Flanking Amino Acid:
IPVSQISTIAGSQLREIFDK
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.3
74.9
37
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
73.9
0.54
1
65.7
44.2
Minor 5ss
27
-2.6
2.9
30.9
42.7
Minor BPS
52.4
0.15
1.9
71.67
44.5

Associated Gene:

Gene:
GLE1
Ensembl Gene ID:
ENSAPLG00000016355
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017074
8309635 - 8319477
9843