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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8315843_8316563_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8315843 - 8316563
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTGGCT
5'SS Class:
major
3'SS Sequence:
TATTTCTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TATTTCTTGATA
Flanking Amino Acid:
VSGLIRTTSERGFPTQVDVA
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
64.4
38.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
75.7
0.58
1
73.2
37
Minor 5ss
30.5
-2.2
3.8
47.6
48
Minor BPS
75.1
0.78
1
78.49
31.3

Associated Gene:

Gene:
GLE1
Ensembl Gene ID:
ENSAPLG00000016355
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017074
8309635 - 8319477
9843