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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8317632_8317790_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8317632 - 8317790
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTAATAGACT
Flanking Amino Acid:
FQDLQEVMEKSLKETQGQQE
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
76.7
0.6
0.9
74.7
40
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
48
-0
2.2
73.3
43.5

Associated Gene:

Gene:
GLE1
Ensembl Gene ID:
ENSAPLG00000016355
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017074
8309635 - 8319477
9843