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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8323008_8323486_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8323008 - 8323486
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTAACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTTGTCTTAACC
Flanking Amino Acid:
QLTLKVEELERKLETTSAQN
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1.1
81.9
31
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.7
0.47
1
63
42.1
Minor 5ss
31.5
-2.1
2.8
40.7
45.1
Minor BPS
74.6
0.75
1.3
78.59
37

Associated Gene:

Gene:
ODF2
Ensembl Gene ID:
ENSAPLG00000016367
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017088
8321595 - 8337085
15491