Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8325285_8325750_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8325285 - 8325750

Intron Length:

466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCATC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTATGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTTTTTTGTATG

Flanking Amino Acid:

EGLIETYKSQVLKTRMEADE

Intron Amino Acid Position:

548

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

76.2

39.9

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

73.4

0.53

44.4

Minor 5ss

42.5

-0.8

3.2

59.7

45.1

Minor BPS

49.6

-0.1

1.8

63.05

39.8

Associated Gene:

Gene:

ODF2

Ensembl Gene ID:

ENSAPLG00000016367

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017088

8321595 - 8337085

15491