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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8328512_8329832_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8328512 - 8329832
Intron Length:
1321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TCTCCCACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
CTTTCTCCCACT
Flanking Amino Acid:
ENNRLTVQIRNLERNEAQHK
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.8
38.3
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
77
0.61
0.8
70.4
28.9
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
46.7
-0.1
2.2
72.5
44.6

Associated Gene:

Gene:
ODF2
Ensembl Gene ID:
ENSAPLG00000016367
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017088
8321595 - 8337085
15491