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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8329950_8330543_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8329950 - 8330543
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTCC
5'SS Class:
major
3'SS Sequence:
GCATCTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGCATCTTATTT
Flanking Amino Acid:
DLIIQIQAEKDQAKTASELS
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.8
37
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.3
0.41
0.9
66.3
39.6
Minor 5ss
40.5
-1.1
2.9
54.3
42.8
Minor BPS
54.3
0.21
1.6
68.69
42.7

Associated Gene:

Gene:
ODF2
Ensembl Gene ID:
ENSAPLG00000016367
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017088
8321595 - 8337085
15491