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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8330616_8331597_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8330616 - 8331597
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTTATTTAAAA
Flanking Amino Acid:
RLADSDAEKVQLQMRLQEKE
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.9
35.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
38.8
-1.3
2.9
45.4
43.9
Minor BPS
64.9
0.46
1.6
74.66
36.2

Associated Gene:

Gene:
ODF2
Ensembl Gene ID:
ENSAPLG00000016367
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017088
8321595 - 8337085
15491