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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8331673_8332599_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8331673 - 8332599
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTACAA
Flanking Amino Acid:
ELLRVQHNRERDAQKILEQQ
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
49.2
-0
2.1
71.18
40.3

Associated Gene:

Gene:
ODF2
Ensembl Gene ID:
ENSAPLG00000016367
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017088
8321595 - 8337085
15491