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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8332732_8333032_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8332732 - 8333032
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATTT
Flanking Amino Acid:
LKNTIGRLNLEKHMSSSDIN
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
70.9
39.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.8
0.78
0.7
78.2
30.7
Minor 5ss
39.8
-1.1
3.7
63.1
43
Minor BPS
57.3
0.31
1.6
74.19
37.2

Associated Gene:

Gene:
ODF2
Ensembl Gene ID:
ENSAPLG00000016367
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017088
8321595 - 8337085
15491