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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8336226_8336977_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8336226 - 8336977
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTATCTTATTT
Flanking Amino Acid:
GQKTTPAKCQQKQKQKMRGN
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.9
41.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
83.9
0.76
0.8
81.3
30.8
Minor 5ss
32.6
-2
3.7
46.1
49.1
Minor BPS
67
0.61
1.6
84.12
37

Associated Gene:

Gene:
ODF2
Ensembl Gene ID:
ENSAPLG00000016367
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017088
8321595 - 8337085
15491