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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8342321_8342622_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8342321 - 8342622
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTACC
5'SS Class:
major
3'SS Sequence:
TTTCTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
MFFISKRLKKRHNLRDDVRQ
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.2
70.9
39.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85
0.79
0.7
85.6
27.9
Minor 5ss
32
-2.1
2.7
38.2
39.5
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
PTGES2
Ensembl Gene ID:
ENSAPLG00000028885
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045060
8341351 - 8343514
2164