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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8355328_8357139_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8355328 - 8357139
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCCATGCAA
5'SS Class:
weak_major
3'SS Sequence:
TCCCGTTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TGATCTGTGATT
Flanking Amino Acid:
ENEDSAAKQVCLDFLVPVAG
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.4
47.7
40.7
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
76.7
0.6
0.8
71.4
32.9
Minor 5ss
17.7
-3.7
3.7
25.8
36.7
Minor BPS
51.4
0.13
2
71.91
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000626
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000874
8351172 - 8368751
17580