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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8357300_8357644_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8357300 - 8357644
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
GGGAGAAAAGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
TTTTCTGTACCT
Flanking Amino Acid:
SPEHKQKAKELGSPEDSEEL
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
60.1
0.25
1
51
35.6
Major PPT
37.3
-0.7
1.6
23.1
35.1
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
60.1
0.4
2.3
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000626
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000874
8351172 - 8368751
17580