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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8359379_8359704_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8359379 - 8359704
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAATC
5'SS Class:
major
3'SS Sequence:
AACCTTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCTCCTAACC
Flanking Amino Acid:
ICKTNCCSQQNFQSHMAGIQ
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
74
34.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
68.6
0.42
0.8
66.1
34.8
Minor 5ss
43.5
-0.7
3
60.5
44.2
Minor BPS
67.8
0.54
1.7
80.63
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000626
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000874
8351172 - 8368751
17580