About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8402833_8403924_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8402833 - 8403924
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTATGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCTGTCTTATGT
Flanking Amino Acid:
PINLRVYSPHVLNLTLVDLP
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
78.2
37.9
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
72.6
0.51
0.9
65.9
39.9
Minor 5ss
35.2
-1.7
3.2
51.1
45.2
Minor BPS
49.8
0.07
2
70.48
46.9

Associated Gene:

Gene:
DNM1
Ensembl Gene ID:
ENSAPLG00000001168
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034023
8397945 - 8435594
37650
ENSAPLT00000025031
8398207 - 8433518
35312
ENSAPLT00000001454
8397945 - 8435594
37650