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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8404129_8404653_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8404129 - 8404653
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTGCTTGATC
Flanking Amino Acid:
LKIAKEVDPQGQRTIGVITK
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.8
0.69
0.9
83
25.9
Minor 5ss
39.5
-1.2
3.2
58.6
45.9
Minor BPS
70
0.61
1.7
81.45
33.4

Associated Gene:

Gene:
DNM1
Ensembl Gene ID:
ENSAPLG00000001168
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001454
8397945 - 8435594
37650
ENSAPLT00000034023
8397945 - 8435594
37650
ENSAPLT00000025031
8398207 - 8433518
35312