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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_8406775_8407923_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8406775 - 8407923
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TCTCTTGGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTAAAA
Flanking Amino Acid:
HERFPFELVKMEFDEKELRR
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.6
0.6
1
72.2
37.8
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
52
0.06
2.1
69.75
42.3

Associated Gene:

Gene:
DNM1
Ensembl Gene ID:
ENSAPLG00000001168
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034023
8397945 - 8435594
37650
ENSAPLT00000025031
8398207 - 8433518
35312
ENSAPLT00000001454
8397945 - 8435594
37650